PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08227s010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family BBR-BPC
Protein Properties Length: 109aa    MW: 11958.8 Da    PI: 9.6218
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08227s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind250.51.1e-762108196301
       GAGA_bind 196 lvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG.ydlsnpvDLkdhW 289
                     ++ln+v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S+yPLP+ +++r+aR++grKmS++af+klL++LaaeG +dlsnpvDLkdhW
  Csa08227s010.1   2 VGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALPNKRHARVGGRKMSGSAFNKLLSRLAAEGhHDLSNPVDLKDHW 96 
                     58*******************************************************************************88************ PP

       GAGA_bind 290 AkHGtnkfvtir 301
                     AkHGtn+++ti+
  Csa08227s010.1  97 AKHGTNRYITIK 108
                     ***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.3E-351108IPR010409GAGA-binding transcriptional activator
PfamPF062172.5E-722108IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MVGLNQVVYD ETTMPPPVCS CTGVLRQCYK WGNGGWQSSC CTTTLSMYPL PALPNKRHAR  60
VGGRKMSGSA FNKLLSRLAA EGHHDLSNPV DLKDHWAKHG TNRYITIK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168881e-154AB016888.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDH9.
GenBankAK2217521e-154AK221752.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-54-A10.
GenBankAK2272461e-154AK227246.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL11-01-O04.
GenBankAY0885641e-154AY088564.1 Arabidopsis thaliana clone 7878 mRNA, complete sequence.
GenBankAY3805721e-154AY380572.1 Arabidopsis thaliana basic pentacysteine 6 (BPC6) mRNA, complete cds.
GenBankBT0248741e-154BT024874.1 Arabidopsis thaliana At5g42520 mRNA, complete cds.
GenBankCP0026881e-154CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankEF1231071e-154EF123107.1 Arabidopsis thaliana GAGA-binding transcriptional activator (BBR/BPC6) gene, complete cds.
GenBankEF1231081e-154EF123108.1 Arabidopsis thaliana GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010497662.14e-78PREDICTED: protein BASIC PENTACYSTEINE6-like, partial
RefseqXP_010481982.14e-78PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2
RefseqXP_010481981.14e-78PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
RefseqXP_006280750.14e-78hypothetical protein CARUB_v10026720mg
SwissprotQ8L9992e-79BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLR0GR445e-78R0GR44_9BRAS; Uncharacterized protein
STRINGAT5G42520.14e-77(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61692647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.26e-81basic pentacysteine 6